Minimum sequence identity (protein-level) for homologs detection

40.0

Minimum percent of strains required to consider an orthogroup as part of the core genome

100.0

Root the species tree according to this outgroup

Waddlia_chondrophila_WSU_86-1044

Apply bootstrap over the species tree

True

Minimum sequence coverage (protein-level) for homologs detection

70.0

Filter out contigs / orfs of plasmids

False

Add orphan genes to orthogroups table

False

Input FASTA files type

genomes

Job name

Chlamydia_run_A

Genome statistics

Phylogenetic Tree

For interactive visualization of the phylogenetic tree, it is recommend to download the Newick file from the download page, and upload it to https://itol.embl.de/upload.cgi

Orthogroups

Legend