Minimum sequence identity (protein-level) for homologs detection
40.0
Minimum percent of strains required to consider an orthogroup as part of the core genome
100.0
Root the species tree according to this outgroup
Waddlia_chondrophila_WSU_86-1044
Apply bootstrap over the species tree
True
Minimum sequence coverage (protein-level) for homologs detection
70.0
Filter out contigs / orfs of plasmids
False
Add orphan genes to orthogroups table
False
Input FASTA files type
genomes
Job name
Chlamydia_run_A
Genome statistics
Phylogenetic Tree
For interactive visualization of the phylogenetic tree, it is recommend to download the Newick file from the download page, and upload it to
https://itol.embl.de/upload.cgi