Minimum sequence identity (protein-level) for homologs detection
60.0
Minimum percent of strains required to consider an orthogroup as part of the core genome
100.0
Root the species tree according to this outgroup
No outgroup
Apply bootstrap over the species tree
False
Minimum sequence coverage (protein-level) for homologs detection
80.0
Filter out contigs / orfs of plasmids
True
Add orphan genes to orthogroups table
True
Input FASTA files type
genomes
Job name
Chlamydia_run_B
Genome statistics
Phylogenetic Tree
For interactive visualization of the phylogenetic tree, it is recommend to download the Newick file from the download page, and upload it to
https://itol.embl.de/upload.cgi