Minimum sequence identity (protein-level) for homologs detection

60.0

Minimum percent of strains required to consider an orthogroup as part of the core genome

100.0

Root the species tree according to this outgroup

No outgroup

Apply bootstrap over the species tree

False

Minimum sequence coverage (protein-level) for homologs detection

80.0

Filter out contigs / orfs of plasmids

True

Add orphan genes to orthogroups table

True

Input FASTA files type

genomes

Job name

Chlamydia_run_B

Genome statistics

Phylogenetic Tree

For interactive visualization of the phylogenetic tree, it is recommend to download the Newick file from the download page, and upload it to https://itol.embl.de/upload.cgi

Orthogroups

Legend