Job Name:

Email address:

File name:

Inputs fasta files type:

Filter out contigs / orfs of plasmids:

Minimum sequence identity (protein-level) for homologs detection:

Minimum sequence coverage (protein-level) for homologs detection:

Minimum percent of strains required to consider an orthogroup as part of the core genome:

Root the species tree according to this outgroup:

Apply bootstrap over the species tree:

Add orphan genes to orthogroups table: